Index

A

App (class in bioprocessnexus.main)

B

batch_prediction_template() (in module bioprocessnexus.prediction_making) batch_prediction_welcome() (in module bioprocessnexus.prediction_making) bioprocessnexus module bioprocessnexus.data_managment module bioprocessnexus.explanations module bioprocessnexus.helpers module bioprocessnexus.hist module bioprocessnexus.interact_hist module

bioprocessnexus.main module bioprocessnexus.mc_subsampling module bioprocessnexus.model_training module bioprocessnexus.optimizer module bioprocessnexus.performance_eval module bioprocessnexus.prediction_making module bioprocessnexus.scaling_performance module bool_switch() (in module bioprocessnexus.data_managment)

C

check_data_scaling_queue() (in module bioprocessnexus.scaling_performance) check_dir() (in module bioprocessnexus.helpers) check_hbo_queue() (in module bioprocessnexus.optimizer) check_hist_queue() (in module bioprocessnexus.hist)

check_plot_predictions_queue() (in module bioprocessnexus.performance_eval) choose_model() (in module bioprocessnexus.data_managment) choose_y() (in module bioprocessnexus.data_managment) clear_dist() (in module bioprocessnexus.interact_hist)

D

data_scaling() (in module bioprocessnexus.scaling_performance) denormalize() (in module bioprocessnexus.helpers)

denormalized_prediction() (in module bioprocessnexus.explanations) disclaimer (class in bioprocessnexus.main)

F

fit_dist() (in module bioprocessnexus.interact_hist)

fix_selection() (in module bioprocessnexus.data_managment)

G

generate_data_interface() (in module bioprocessnexus.mc_subsampling)

generate_dataset() (in module bioprocessnexus.mc_subsampling) get_probability() (in module bioprocessnexus.interact_hist)

H

handle_focus_in() (in module bioprocessnexus.mc_subsampling)

hoptr() (in module bioprocessnexus.optimizer)

I

init_data_scaling() (in module bioprocessnexus.scaling_performance) init_hist() (in module bioprocessnexus.hist) init_plot_predictions() (in module bioprocessnexus.performance_eval)

initial_normalize() (in module bioprocessnexus.model_training) interactive_hist() (in module bioprocessnexus.interact_hist) interactive_hist_welcome() (in module bioprocessnexus.interact_hist) intiate_optimizer_main() (in module bioprocessnexus.optimizer)

L

launch_nexus() (bioprocessnexus.main.App method) (in module bioprocessnexus.main)

M

make_batch_predictions() (in module bioprocessnexus.prediction_making) make_explanation() (in module bioprocessnexus.explanations) make_predictions() (in module bioprocessnexus.prediction_making) mix_models() (in module bioprocessnexus.data_managment) module bioprocessnexus bioprocessnexus.data_managment bioprocessnexus.explanations bioprocessnexus.helpers bioprocessnexus.hist bioprocessnexus.interact_hist bioprocessnexus.main bioprocessnexus.mc_subsampling bioprocessnexus.model_training bioprocessnexus.optimizer bioprocessnexus.performance_eval bioprocessnexus.prediction_making bioprocessnexus.scaling_performance

N

nexus (class in bioprocessnexus.main)

nice_round() (in module bioprocessnexus.helpers) normalize() (in module bioprocessnexus.helpers)

O

on_closing() (bioprocessnexus.main.nexus method)

open_help() (in module bioprocessnexus.helpers) optimize() (in module bioprocessnexus.optimizer)

P

plot_explanation() (in module bioprocessnexus.explanations) plot_hist() (in module bioprocessnexus.hist)

plot_predictions() (in module bioprocessnexus.performance_eval) PLS_optimize_train() (in module bioprocessnexus.model_training) predict() (in module bioprocessnexus.prediction_making)

R

run_hopt() (in module bioprocessnexus.optimizer)

S

save_inter_hist() (in module bioprocessnexus.interact_hist)

save_mixture_model() (in module bioprocessnexus.data_managment) set_file_dir() (in module bioprocessnexus.data_managment)

T

target_function() (in module bioprocessnexus.optimizer) train_GP() (in module bioprocessnexus.model_training) train_models() (in module bioprocessnexus.model_training)

train_PLS() (in module bioprocessnexus.model_training) train_RF() (in module bioprocessnexus.model_training) train_save_params() (in module bioprocessnexus.model_training)

U

unzip_dir() (in module bioprocessnexus.helpers)

update_dist_params() (in module bioprocessnexus.mc_subsampling) update_hist() (in module bioprocessnexus.interact_hist)

Z

zip_dir() (in module bioprocessnexus.helpers)